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Documents from 2017

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Analytical Flood Risk Models for First Responder Use: Obstruction Detection and Risk Assessment, Brett Edmond Carlock

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Revising a Habitat Suitability Model for Spotted Turtles (Clemmys guttata) in Upstate New York, Caitlin Dailey

Documents from 2016

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Developing a Prototype System for Syndromic Surveillance and Visualization Using Social Media Data., Anup Aryal

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Determining the Impact of Latitude on Parturition Timing in Captive North American River Otters: A Statistical Analysis of AZA Studbook Records, Jordan I. Bailey

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Computational analysis in vivo p53 binding sites in the context of chromatin and repeat regions, Feifei Bao

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Analyses of amber mutants of Salmonella phage SPN3US, Andrea Denisse Benítez Quintana

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Investigating the Role of Anaerobic Bacteria in Colorectal Carcinoma, Oluwadara Coker

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Oh Deer! Analyzing the Impact of RIT Expansion and Development on White-tailed Deer (Odocoileus Virginianus) and Vehicle Collisions from 1993-2014, Gina De Naples

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Killing Two Birds with One Stone: The Concurrent Development of the Novel Alignment Free Tree Building Method, Scrawkov-Phy, and the Extensible Phyloinformatics Utility, EMU-Phy., J. Nick Fisk

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Development of a Data Management System for Grape Breeding Programs, Connor Fortin

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Isolation of Pharmaceutical-Degrading Bacteria from Lake Sediments Associated with Wastewater Effluents, Noreen Anne Gallagher

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Improving the Performance of ProMOL by Integrating Communal Database Access, Alexander Grier

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Investigation of methods for machine learning associations between genetic variations and phenotype, Amanda M. Hartung

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Using Geographic Information Systems to Identify Habitat for the Golden-winged Warbler (Vermivora chrysoptera) in Western New York, Jesse Michael Rubenstein

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The influences of different socioeconomic scenarios in bioinformatics and biotechnology research: The ethical issues arising from technological advances, Marcia Miki Sato

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Estimates of Emissions from Heavy Duty Diesel Vehicles (HDDV) and Control Strategies Related to Transport Activities Supporting High Volume Hydraulic Fracturing Wells in the Marcellus Shale Formation, Rachel M. Zoyhofski

Documents from 2015

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Homology Based Motif Generation, Cameron Baker

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Computational identification of conserved haustorial-expressed genes in the grapevine powdery mildew fungus Erysiphe necator, Miriam E. Barnett

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Effect of Simulated Canopy Cover on Created Vernal Pools in the Northeastern US, Elizabeth Anne Bruen

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Assessment of Alignment Algorithms, Variant Discovery and Genotype Calling Strategies in Exome Sequencing Data, Anthony Corbett

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Developing an algal biofilm filtration system for the remediation of nutrient pollution in freshwater ponds, Danielle Delp

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Data mining NHANES: Utilizing a Genetic Algorithm to Detect Correlation Between Birth Sex Ratio and Epidemiological Factors, Christopher F. Fucile

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Repurposing vacant lots for stormwater runoff mitigation in Rochester, New York, Sandra Golberg

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Biodiversity and the role of bioturbating invertebrates in nutrient cycling in stormwater ponds, Kerry Lee Kuntz

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Trans-species Transcriptomic Comparison of in vitro and in vivo Neural Cells, Peter LoVerso

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Modeling Atmospheric Emissions and Calculating Mortality Rates Associated with High Volume Hydraulic Fracturing Transportation, Alyssa Mathews

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Seasonal Variation in Chronic Stress and Energetic Condition in Three Species of Migratory Birds, Meghan Oberkircher

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Phylogeographic Study of Ctenosaura similis, Hasret Ozturk

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Recommended Plantings for Migratory Songbird Habitat Management, Susan B. Smith and Scott R. McWilliams

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Investigating Annual Variation in Fruit Quality Using Nutrient Assays and Multidimensional Fluorescence Spectroscopy, Harshita Sood

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Analysis of Nicotine in Electronic Cigarettes Using Gas Chromatography-mass Spectrometry, Gloria Wink

Documents from 2014

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NuMap: a web platform for prediction of nucleosome rotational and translational positioning at high resolution, Bader Alharbi

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Development of SRADE tool and analysis of quality scores of the reads of Next-Generation Sequencing data, Chaitanya Krishna Kotha

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Effect of Herbivory on the Growth and Competitive Ability of Reed Canary Grass (Phalaris arundinacea), Lisa A. Kratzer

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Characterization of the Ren4 resistance locus through the integration of de novo assembly, expression analysis, and Genotyping-by-Sequencing data, Jacquelyn A. Lillis

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Variability in the phenolic content of invasive and non-invasive emergent wetland plants, Melissa M. Maurer

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Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment, Katharina Schulze

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A Composite Interface for Bioinformatics Applications (CIBA), Daniel F. Surdyk III

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A Study of Nucleosome Sequence and Relative Position to Gene Transcription Start Sites in Yeast and Human Genomes, Greg Wright

Documents from 2013

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Quantifying Mutational Impacts on Intrinsic DNA Flexibility in Prokaryotic Genomes, Mohammed Alawad

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Movement of juvenile coho salmon (Onchorynchus kisutch) and Dolly Varden char (Salvelinus malma) in headwater rearing habitat in the Kenai Lowlands of south-central Alaska, Kristin Berger

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The Impact of Small Pass-through Wetlands and Stormwater Retention Ponds on Dissolved Organic Matter, Michael B. Burkett

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Whole-transciptome analysis of [psi+] budding yeast via cDNA microarrays, Jared Carter

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An Assessment of worldview-2 imagery for the classification of a mixed deciduous forest, Nahid Carter

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Determining a new alignment scoring matrix for disordered proteins, Adam Handen

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Genes of Interest in Bronchopulmonary Dysplasia: Studies of Genome-Wide Expression Profiling Data from Lung and Peripheral Blood Samples, Jared A. Mereness

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A Study of the Deer Herd on the RIT Campus and the Relationship of Herd Activity and Habitat to the Incidence of Deer-Vehicle Collisions, Philip Nau

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Monitoring the natural processing of organic carbon and phenols in selective wetlands within Monroe County, NY, Muhammad Rubaiyat

Documents from 2012

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Mathematical modeling and screening of ligand binding sites in protein using the tetrahedral motif method and double-centroid representation, Arkanjan Banerjee

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The Development of resistance to antibiotics from bacteria exposed to Triclosan and Triclocarban in Lake Ontario, Daniel Boone

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Otter spotter: The Creation and evaluation of an educational resource for the association of zoos and aquariums, Rochester Institute of Technology, and the Seneca Park Zoo, Emily Coon-Frisch

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Assembly, annotation, and polymorphic characterization of the Erysiphe necator transcriptome, Jason Myers

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Cancer biotherapy resource, Preety Priya

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Discovering the role of SERPINE2 in COPD, Swati Shimpi

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Environmental science in middle school curricula: A Pilot project in the Dominican Republic, Laura Tejeda

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Macroinvertebrates online, Caitlin Treuting

Documents from 2011

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Presettlement Forest Composition in the Connecticut Tract of Western New York, Evelyn Brister

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Part 1: Size-independent quantification of ligand binding site depth in receptor proteins. Part 2: Representing rod-shaped protein 3d structures in cylindrical coordinates, Srujana Cheguri

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Spherical distance metrics applied to protein structure classification, James DeFelice

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Error sentinel: A Rule-based spreadsheet program for intelligent data entry, error correction, and curation, Kyle Dewey

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Distribution patterns of river otters, Lontra canadensis, within Monroe County, New York, Darren Doherty

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Discovering inner ear and central auditory system cellular pathways that might contribute to age-related hearing loss, Xiaoxi Liu

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RNA-Sequencing analysis from the triceps muscle of normal and myostatin-deficient mice using various tools, Richard Rodrigues

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A Study of phylogenetic trees versus networks to objectively identify haplogroups in mitochondrial dna, Melissa Ruda

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Electronic medical records concepts and data management, Shruti Sharma

Documents from 2010

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Exploratory analysis of pathogen resistance responsible genetic elements in two eudicots from whole genome sequence, Aubrey Bailey

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The NHANES III database: Design and a retrospective study to identify associations between vitamin D and hypertension, Brandon J. Marzullo

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mtPrimer3: PCR primer design for mtDNA, Psalm Mizuki

Documents from 2009

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The Interaction of peptides with functionalized carbon nanotubes, Poulami Barman

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Genetic elements of microbes: a comprehensive and integrated genomic database application, Ashlee Benjamin

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Identification of an rsh gene from a novosphingobium sp. necessary for quorum-sensing signal accumulation, Han Ming Gan, Larry Buckley, and Erno Szegedi

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The Potential impact of riparian buffer zones on sediment and phosphorus loading in two Canandaigua Lake subwatersheds, Valerie George

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Quorum-sensing signal production byAgrobacteriumvitis strains and their tumor-inducing and tartrate-catabolic plasmids, Nathanial Lowe, Han Ming Gan, and Vandana Chakravartty

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Benthic macroinvertebrate diversity in a shallow estuary: controls on nutrient and algal dynamics, Natalie Ann McLenaghan

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Environmental enrichment effects on the activity of a nearctic river otter, Kenneth O. Nelson

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Annotation consistency tool: the assessment of JCVI microbial genome annotations, Rhea I. Sanchez

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Visualization of protein 3D structures in reduced representation with simultaneous display of intra and inter-molecular interactions, Vrunda Sheth

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In silico drug design of potential novel anti malarial agents, Vishal Thovarai

Documents from 2008

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Detecting relevant changes in high throughput gene expression data, Anusha Aiyalu Kannan

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The use of molecular scatology to study river otter (Lontra canadensis) genetics, Barbara McElwee

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YZGD pyridoxal phosphatase from P. thiaminolyticus; subcloning, expression, and purification for x-ray crystallography structure determination, Amanda M. Strassner

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Differential selective pressures acting on the Influenza A genome: A Comparative study, Melissa Wilbert

Documents from 2007

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Analysis of yeast codon usage patterns using the movable ORF collection, Nunut Butarbutar

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Developing a habitat suitability model for the spotted turtle using a hybrid-deductive approach, Bryan Correa-Berger

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Parallelizing the Cluster Rank Analysis application, Anthony G. Esposito Jr.

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EZ-Viz movie, Laura Lynn Grell

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Identification of trans-splicing sites in Leishmania major using probabilistic methods, Lukas Habegger

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Pedigree tool, Madhumalar Panneerselvam

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Conservation of the BRCA1 gene, Matthew Gary Wronkowski

Documents from 2006

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The Effectiveness of captive release conservation methods for Spotted Turtles (Clemmys Guttata), Kate Cassim

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An Evolutionary Computation Approach to Optimization of Isoelectric Point Prediction in Proteins, Chris Parkin

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Preparation for radiological disasters: A Radiation effects epidemiological database, Martha S. Raj

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Microhabitat use, home range, and movements of the alligator snapping turtle, Macrochelys temminckii, in Oklahoma, J. Daren Riedle, Paul Shipman, and Stanley Fox

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Development of an Automated Template Selection and Alignment Tool for Protein Structure Homology Modeling, David R. Riley

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Food habits of a re-introduced river otter (Lontra canadensis) population in Western New York- annual diet, temporal and spatial variation in diet and prey selection conclusions, Melissa Skyer

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LigEvolver: A Tool for ligand formulation using genetic algorithm, Priyadarsini Soundararajan

Documents from 2005

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Isoelectric point prediction from the amino acid sequence of a protein, Matthew Conte

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The environmental gradients and plant communities of Bergen Swamp, N.Y., U.S.A., Aaron Hall

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Considerable haplotype diversity within the 23kb encompassing the ADH7 gene., Yi Han, Hiroki Oota, and Michael Osier

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Automated extraction of disease-gene relationships from MEDLINE, Jennifer R. Paine